Texture coordinates not working in game

Well, I have been working on my own little mod and downloaded a model of a halo hornet which had no texture, so I made it myself and it's really bad but it looks great in hardCMP. My problem is that when I start freelancer the game seems to ignore the texture coordinates I had. Attached are pics of what it looks like in hardCMP and freelancer.

Just also added pic of it in milkshape with texture coordinates
and yes I did flip the texture for the mat file.
If you look at the materials you can see that I have a separate texture for the transparent windows, this rules out anything with the uv mapping as I didnt use any for the windows.

its tga and I already flipped it. I just dont see how I did this one differently to all of my other ones, which worked.

Also the texture isn't flipped backwards in game, its the whole texture wrapped around the hornet in a way that you can see the original texture on the ship.

No, notice the orange splodge of color in the texture coordinates. It normally wraps around small bars but in the game it just sits in one big blob if it was flipped it would just have two brown spots on the sides of the body just behind and below the cockpit, instead they are on the top.

just put up a picture of what I mean

Ya know I think i'll just give up and try the whole process again and see if it makes a difference

thanks anyway

Now working upload finished copy