For Missions you can edit
DATA RandomMissions RMLootInfo.ini
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[RMBonusLoot]
archetype = ge_s_tractor_02
num_to_drop = 1
faction = all
difficulty_range = 40, 100
weight = 5
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for normal system encounters
DATA Missions LootProps.ini
eg
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[mLootProps]
nickname = special_gun15
drop_properties = 25, 646965, 646965, 0, 2, 1
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edit the loadouts with the items you wish too drop at Data Ships *loadout.ini
i think mounted stuff drops, although works as cargo
cargo = your_item, numeric_amount
hope this helps